Differences
This shows you the differences between two versions of the page.
|
en:евгений_дубpoвин [2016/08/17 23:18] Евгений Дубровин [The list of publications] |
en:евгений_дубpoвин [2021/03/27 08:57] (current) Евгений Дубровин [The list of publications] |
||
|---|---|---|---|
| Line 1: | Line 1: | ||
| ====EVGENIY DUBROVIN==== | ====EVGENIY DUBROVIN==== | ||
| - | {{:me9.jpg?200|}}\\ | + | {{:me9.jpg?100|}}\\ |
| + | Doctor of Science (habilitation) in Physics and Mathematics (2018)\\ | ||
| **Current Position**\\ | **Current Position**\\ | ||
| - | Senior Research Associate, Chair of Physics of Polymers and Crystals, Faculty of Physics, M.V.Lomonosov Moscow State University\\ | + | Leading Research Associate, Chair of Physics of Polymers and Crystals, Faculty of Physics, Lomonosov Moscow State University\\ |
| - | **Born** in Moscow in 1980\\ | + | |
| - | **Education**\\ | + | |
| - | 1997 - 2003 - M.V.Lomonosov Moscow State University, Faculty of Physics, Chair of Biophysics. Master of science in biophysics, 2003 (diploma with excellence).\\ | + | |
| - | 2003 - 2005 - M.V.Lomonosov Moscow State University, Faculty of Physics, Chair of Physics of Polymers and Crystals. Candidate of Science (PhD) in Physics and Mathematics\\ | + | |
| **Scope of scientific interests:** Scanning probe microscopy of nucleic acids, proteins, nucleoproteins, viruses, bacterial cells. Self-organization of biopolymers on the surface\\ | **Scope of scientific interests:** Scanning probe microscopy of nucleic acids, proteins, nucleoproteins, viruses, bacterial cells. Self-organization of biopolymers on the surface\\ | ||
| - | **Foreign languages:** English, German\\ | ||
| - | **Hobby:** Tourism, chess, classical guitar\\ | ||
| **Email**\\ | **Email**\\ | ||
| {{:addr3.jpg?200 |}}\\ | {{:addr3.jpg?200 |}}\\ | ||
| Line 20: | Line 15: | ||
| M.V. Lomonosov Moscow State University scholarship, 2010, 2012, 2013\\ | M.V. Lomonosov Moscow State University scholarship, 2010, 2012, 2013\\ | ||
| ===The list of publications=== | ===The list of publications=== | ||
| - | - E.V. Dubrovin, M. Schächtele, and T.E. Schäffer. Nanotemplate-directed DNA segmental thermal motion. RSC Advances, 2016. [[http://dx.doi.org/10.1039/C6RA14383K|DOI]] | + | - E.V. Dubrovin, L.A. Dadinova, M.V. Petoukhov, E.Yu. Soshinskaya, A.A. Mozhaev, D.V. Klinov, T.E. Schäffer, E.V. Shtykova, O.V. Batishchev. Spatial Organization of Dps and DNA–Dps Complexes. Journal of Molecular Biology, 2021, 166930. [[https://doi.org/10.1016/j.jmb.2021.166930|DOI]] |
| - | - N.A. Barinov, V.V. Prokhorov, E.V. Dubrovin, D.V. Klinov. AFM visualization at a single-molecule level of denaturated states of proteins on graphite. Colloids and Surfaces B: Biointerfaces, 2016, 146, 777-784. [[http://dx.doi.org/10.1016/j.colsurfb.2016.07.014|DOI]] [[http://authors.elsevier.com/a/1TQ8e3IyxDht2j|personal article link]] | + | - E.V. Dubrovin, D.V. Klinov, T.E. Schäffer. Evidence of (anti)metamorphic properties of modified graphitic surfaces obtained in real time at a single-molecule level. Colloids and Surfaces B: Biointerfaces, 2020, 193, 111077. [[https://doi.org/10.1016/j.colsurfb.2020.111077|DOI]] |
| - | - O.N. Koroleva, E.V. Dubrovin, I.V. Yaminsky, V.L. Drutsa. Effect of DNA bending on transcriptional interference in the systems of closely spaced convergent promoters. Biochimica et Biophysica Acta - General Subjects, 2016, 1860, 2086–2096. [[http://dx.doi.org/10.1016/j.bbagen.2016.06.026|DOI]] [[http://authors.elsevier.com/a/1TNvR15Dr~KMNk|personal article link]] | + | - A.P. Tolstova, E.V. Dubrovin. Influence of Pixelization on Height Measurement in Atomic Force Microscopy. Ultramicroscopy, 2019, 207, 112846. [[https://doi.org/10.1016/j.ultramic.2019.112846|DOI]] |
| + | - A.S. Erofeev, P.V. Gorelkin, D.V. Kolesov, G.A. Kiselev, E.V. Dubrovin, I.V. Yaminsky. Label-free sensitive detection of influenza virus using PZT discs with a synthetic sialylglycopolymer receptor layer. Royal Society Open Science, 2019, 6, 190255. [[https://doi.org/10.1098/rsos.190255|DOI]] | ||
| + | - E.V. Dubrovin, N.A. Barinov, T.E. Schäffer, and D.V. Klinov. In Situ Single-Molecule AFM Investigation of Surface-Induced Fibrinogen Unfolding on Graphite. Langmuir, 2019, 35, 9732-9739. [[https://doi.org/10.1021/acs.langmuir.9b01178|DOI]] | ||
| + | - N.A. Barinov, I.I. Vlasova, A.V. Sokolov, V.A. Kostevich, E.V. Dubrovin, D.V. Klinov. High-resolution atomic force microscopy visualization of metalloproteins and their complexes. Biochimica et Biophysica Acta - General Subjects, 2018, 1862, 2862-2868. [[http://dx.doi.org/10.1016/j.bbagen.2018.09.008|DOI]] | ||
| + | - A.M. Varizhuk, A.D. Protopopova, V.B. Tsvetkov, N.A. Barinov, V.V. Podgorsky, M.V. Tankevich, M.A. Vlasenok, V.V. Severov, I.P. Smirnov, E.V. Dubrovin, D.V. Klinov, G.E. Pozmogova. Polymorphism of G4 associates: from stacks to wires via interlocks. Nucleic Acids Research, 2018, 46, 8978-8992. [[http://dx.doi.org/10.1093/nar/gky729|DOI]] | ||
| + | - E.V. Dubrovin, N.A. Barinov, D.V. Klinov. High resolution atomic force microscopy visualization of fibrinogen unfolding on modified graphite. Microscopy and Microanalysis, 2018, 24, S1, 1236-1237. [[http://dx.doi.org/10.1017/S1431927618006669|DOI]] | ||
| + | - N.A. Barinov, A.P. Protopopova, E.V. Dubrovin, D.V. Klinov. Thermal denaturation of fibrinogen visualized by single-molecule atomic force microscopy. Colloids and Surfaces B: Biointerfaces, 2018, 167, 370-376. [[http://dx.doi.org/10.1016/j.colsurfb.2018.04.037|DOI]] | ||
| + | - E.V. Dubrovin, M. Schächtele, D.V. Klinov, and T.E. Schäffer. Time-lapsed single biomolecule atomic force microscopy investigation on modified graphite in solution. Langmuir, 2017, 33, 10027-10034. [[http://dx.doi.org/10.1021/acs.langmuir.7b02220|DOI]] | ||
| + | - E.V. Dubrovin, M. Schächtele, and T.E. Schäffer. Nanotemplate-directed DNA segmental thermal motion. RSC Advances, 2016, 6, 79584-79592. [[http://dx.doi.org/10.1039/C6RA14383K|DOI]] | ||
| + | - N.A. Barinov, V.V. Prokhorov, E.V. Dubrovin, D.V. Klinov. AFM visualization at a single-molecule level of denaturated states of proteins on graphite. Colloids and Surfaces B: Biointerfaces, 2016, 146, 777-784. [[http://dx.doi.org/10.1016/j.colsurfb.2016.07.014|DOI]] | ||
| + | - O.N. Koroleva, E.V. Dubrovin, I.V. Yaminsky, V.L. Drutsa. Effect of DNA bending on transcriptional interference in the systems of closely spaced convergent promoters. Biochimica et Biophysica Acta - General Subjects, 2016, 1860, 2086–2096. [[http://dx.doi.org/10.1016/j.bbagen.2016.06.026|DOI]] | ||
| - O.N. Koroleva, E.V. Dubrovin, A.P. Tolstova, N.V. Kuzmina, T.V. Laptinskaya, I.V. Yaminsky, V.L. Drutsa. A hypothetical hierarchical mechanism of self-assembly of Escherichia coli RNA polymerase σ<sup>70</sup> subunit. Soft Matter, 2016, 12, 1974-1982. [[http://dx.doi.org/10.1039/C5SM02934A|DOI]] | - O.N. Koroleva, E.V. Dubrovin, A.P. Tolstova, N.V. Kuzmina, T.V. Laptinskaya, I.V. Yaminsky, V.L. Drutsa. A hypothetical hierarchical mechanism of self-assembly of Escherichia coli RNA polymerase σ<sup>70</sup> subunit. Soft Matter, 2016, 12, 1974-1982. [[http://dx.doi.org/10.1039/C5SM02934A|DOI]] | ||
| - P.V. Gorelkin, A.S. Erofeev, G.A. Kiselev, D.V. Kolesov, E.V. Dubrovin, I.V. Yaminsky. Synthetic sialylglycopolymer receptor for virus detection using cantilever-based sensors. The Analyst, 2015, 140, 6131-6137. [[http://dx.doi.org/10.1039/C5AN01102G|DOI]] | - P.V. Gorelkin, A.S. Erofeev, G.A. Kiselev, D.V. Kolesov, E.V. Dubrovin, I.V. Yaminsky. Synthetic sialylglycopolymer receptor for virus detection using cantilever-based sensors. The Analyst, 2015, 140, 6131-6137. [[http://dx.doi.org/10.1039/C5AN01102G|DOI]] | ||
| + | - A.P. Tolstova, E.V. Dubrovin, O.N. Koroleva. Investigation of σ<sup>70</sup> subunit structure dependence in //Escherichia coli// RNA polymerase on ionic strength by the molecular dynamics simulation method. Biophysics, 2015, 60, 865–869. [[http://dx.doi.org/10.1134/S0006350915060251|DOI]] | ||
| - E.V. Dubrovin, G.V. Presnova, M.Yu Rubtsova, A.M. Egorov, V.G. Grigorenko, I.V. Yaminsky. The Use of Atomic Force Microscopy for 3D Analysis of Nucleic Acid Hybridization on Microarrays. Acta naturae, 2015, 7, 108–114. [[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4463420/pdf/AN20758251-25-108.pdf|PDF]] | - E.V. Dubrovin, G.V. Presnova, M.Yu Rubtsova, A.M. Egorov, V.G. Grigorenko, I.V. Yaminsky. The Use of Atomic Force Microscopy for 3D Analysis of Nucleic Acid Hybridization on Microarrays. Acta naturae, 2015, 7, 108–114. [[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4463420/pdf/AN20758251-25-108.pdf|PDF]] | ||
| - E.V. Dubrovin, S. Speller, I.V. Yaminsky. Statistical analysis of molecular nanotemplate driven DNA adsorption on graphite. Langmuir, 2014, 30, 15423–15432. [[http://dx.doi.org/10.1021/la5041773|DOI]] | - E.V. Dubrovin, S. Speller, I.V. Yaminsky. Statistical analysis of molecular nanotemplate driven DNA adsorption on graphite. Langmuir, 2014, 30, 15423–15432. [[http://dx.doi.org/10.1021/la5041773|DOI]] | ||
| + | - E.V. Dubrovin, G.V. Presnova, M.Y. Rubtsova, V.G. Grigorenko, A.I. Ivanin, A.M. Egorov, I.V. Yaminsky. Implementation of scanning probe microscopy for the solution of molecular diagnostics tasks. Biomeditsinskaia khimiia, 2014, 60, 543-547 (in Russian). | ||
| - O.N. Koroleva, E.V. Dubrovin, Yu.A. Khodak, N.V. Kuzmina, I.V. Yaminsky, V.L. Drutsa. The Model of Amyloid Aggregation of //Escherichia coli// RNA Polymerase σ<sup>70</sup> Subunit Based on AFM Data and In Vitro Assays. Cell Biochemistry and Biophysics, 2013, 66, 623-636. [[http://dx.doi.org/10.1007/s12013-012-9507-2|DOI]] | - O.N. Koroleva, E.V. Dubrovin, Yu.A. Khodak, N.V. Kuzmina, I.V. Yaminsky, V.L. Drutsa. The Model of Amyloid Aggregation of //Escherichia coli// RNA Polymerase σ<sup>70</sup> Subunit Based on AFM Data and In Vitro Assays. Cell Biochemistry and Biophysics, 2013, 66, 623-636. [[http://dx.doi.org/10.1007/s12013-012-9507-2|DOI]] | ||
| - E.V. Dubrovin, A.V. Popova, S.V. Kraevskiy, S.G. Ignatov, T.E. Ignatyuk, I.V. Yaminsky, N.V. Volozhantsev. Atomic Force Microscopy Analysis of the //Acinetobacter baumannii// Bacteriophage AP22 Lytic Cycle. PLOS ONE, 2012, 7(10): e47348. [[http://dx.doi.org/10.1371/journal.pone.0047348|DOI]] | - E.V. Dubrovin, A.V. Popova, S.V. Kraevskiy, S.G. Ignatov, T.E. Ignatyuk, I.V. Yaminsky, N.V. Volozhantsev. Atomic Force Microscopy Analysis of the //Acinetobacter baumannii// Bacteriophage AP22 Lytic Cycle. PLOS ONE, 2012, 7(10): e47348. [[http://dx.doi.org/10.1371/journal.pone.0047348|DOI]] | ||
| Line 53: | Line 60: | ||
| ===Patents=== | ===Patents=== | ||
| - Method for //Escherichia coli// bacteria identification by detecting their fragments by atomic force microscopy: Patent 2437937 Russian Federation: IPC C12Q 1/00 G01N 13/00 B01D 15/38 / E.V. Dubrovin, G.N. Fedyukina, S.V. Kraevsky, T.E. Ignatyuk, O.N. Perovskaya, I.V. Yaminsky, S.G. Ignatov; application 2010116544/10, 27.04.2010; date of publication: 27.12.2011 Bull. 36. | - Method for //Escherichia coli// bacteria identification by detecting their fragments by atomic force microscopy: Patent 2437937 Russian Federation: IPC C12Q 1/00 G01N 13/00 B01D 15/38 / E.V. Dubrovin, G.N. Fedyukina, S.V. Kraevsky, T.E. Ignatyuk, O.N. Perovskaya, I.V. Yaminsky, S.G. Ignatov; application 2010116544/10, 27.04.2010; date of publication: 27.12.2011 Bull. 36. | ||
| + | - Device for identification of nucleotide sequences: Patent 2537267 Russian Federation: IPC C12Q 1/68 / A.S. Erofeev, I.V. Yaminsky, E.V. Dubrovin, A.A. Gaskarov, A.I. Ivanin, M.Y. Rubtsova, G.V. Presnova, M.M. Ulyashova, V.G. Grigirenko, A.M. Egorov; application 2013130178/10; 03.07.2013; date of publication: 20.05.2014, Bull. 14. | ||
